fig|1040638.4.peg.9   Escherichia coli O104:H4 str. LB226692     MGR-----------TSVEKVGTYVTNTGLMATYGGQFTLTISVMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQQASNGLSDNRCLEI
fig|216592.1.peg.5146   Escherichia coli 042     MNKKTALHPKKTTSSSTEKVGTYVTNTGLMATYGGQFTLTISVMSKPDGLTAAKNLAETFEHYNEWHPHSALGYRSPREYLRQQASNGLSDNRCLEI
fig|216592.3.peg.5098   Escherichia coli 042                                  MATYGGQFTLTISVMSKPDGLTAAKNLAETFEHYNEWHPHSALGYRSPREYLRQQASNGLSDNRCLEI
fig|585397.9.peg.5322   Escherichia coli ED1a                                  MATYGGQFTLT-------------HNLAVAIEHYNENHPHSALGYRSPREYRRQWVT--LT       
fig|585397.6.peg.210   Escherichia coli ED1a                                  MATYGGQFTLT-------------HNLAVAIEHYNENHPHSALGYRSPREYRRQWVT--LT       
Consen1   Primary consensus     M              S EKVGTYVTNTGLMATYGGQFTLTisvmskpdgltaakNLAeafEHYNEwHPHSALGYRSPREYlRQqasngLsDNRCLEI
Consen2   Secondary consensus                                                          h   vti     n              r  wvt-- t       

Consensus 1 (when a gap)
Conservative difference
Consensus 2 (when a gap)
Nonconservative diff.
Other character