fig|585397.7.peg.1109   Escherichia coli ED1a     M----R--------------PADVFSITASGIYVNTARDNLSPQMVICMFFIWIYFLQG
fig|1040638.4.peg.606   Escherichia coli O104:H4 str. LB226692     M----R--------------PADVFSITASGIYVNTARDNLSPQMVICMFFIWIYFLQG
fig|585397.9.peg.1107   Escherichia coli ED1a     M----R--------------PADVFSITASGIYVNTARDNLSPQMVICMFFIWIYFLQG
fig|6666666.5357.peg.4379   Escherichia coli TY-2482     M----R--------------PADVFSITASGIYVNTARDNLSPQMVICMFFIWIYFLQG
fig|340186.3.peg.2745   Escherichia coli E110019     M----R--------------PADVFSITASGIYVNTARDNLSPQMVICMFFI       
fig|216593.1.peg.2333   Escherichia coli E2348/69     M----R--------------PADVFSITASGIYANTARDNLSPQMVICMFFI       
fig|749533.3.peg.4737   Escherichia coli MS 84-1     MLPFFRAKFLRASPSWWSVRPADVLSITASGIYVNTARDNLSPQMVICMFFI       
fig|679205.4.peg.2552   Escherichia coli MS 124-1     MLPFFRAKFLRASPSWWSVRPADVLSITASGIYVNTARDNLSPQMVICMFFI       
Consen1   Primary consensus     M----R--------------PADVfSITASGIYVNTARDNLSPQMVICMFFIWIYFLQG
Consen2   Secondary consensus      lpff akflraspswwsvr    l                                  

Consensus 1 (when a gap)
Conservative difference
Consensus 2 (when a gap)
Nonconservative diff.
Other character