Alignment colored by consensus

fig\|444454.5.peg.418		Escherichia coli O157:H7 str. EC4024 (383-433/433)			`MNHFIGGKSGGSIYYKPIQCPTGYIMTGTRMYGIGDGVDEEHVDAYCCPFN`
fig\|562.373.peg.6		Escherichia coli 1125A (15-64/65)			`MNHFIGGKSGGSIYYKPIQCPTGFIMTGTRMYGIGDGVDEEHVDAYCCPF`
fig\|562.373.peg.675		Escherichia coli 1125A (15-64/65)			`MNHFIGGKSGGSIYYKPIQCPTGFIMTGTRMYGIGDGVDEEHVDAYCCPF`
fig\|562.375.peg.5474		Escherichia coli EC4100B (15-64/65)			`MNHFIGGKSGGSIYYKPIQCPTGFIMTGTRMYGIGDGVDEEHVDAYCCPF`
fig\|1040638.4.peg.595		Escherichia coli O104:H4 str. LB226692			`MNHFIGGKSGGSIYYKPIQCPTGYIMTGTRMYGIGDGVDEEHVDAYCCPFN`
fig\|6666666.5357.peg.2316		Escherichia coli TY-2482			`MNHFIGGKSGGSIYYKPIQCPTGYIMTGTRMYGIGDGVDEEHVDAYCCPFN`
fig\|679207.4.peg.4563		Escherichia coli MS 107-1			`MNHFIGGKSGGSIYYKPIQCPTGYIMTGTRMYGIGDGVDEEHVDAYCCPFN`
fig\|679205.4.peg.5536		Escherichia coli MS 124-1			`MNHFIGGKSGGSIYYKPIQCPTGYIMTGTRMYGIGDGVDEEHVDAYCCPFN`
fig\|749533.3.peg.3458		Escherichia coli MS 84-1			`MNHFIGGKSGGSIYYKPIQCPTGYIMTGTRMYGIGDGVDEEHVDAYCCPFN`
fig\|444454.5.peg.415		Escherichia coli O157:H7 str. EC4024			`MNHFIGGKSGGSIYYKPIQCPTGYIMTGTRMYGIGDGVDEEHVDAYCCPFN`
fig\|656440.3.peg.5331		Escherichia coli TA206 (16-65/65)			`NHFIGGDSGGSIYYKPVSCPTGYVMTGTRMYGIGDGVDEEHVDAYCCPFN`
fig\|562.375.peg.5438		Escherichia coli EC4100B (1-50/51)			`MNHFIGGKSGGSIYYKPIQCPTGFIMTGTRMYGIGDGVDEEHVDAYCCPF`
fig\|749540.3.peg.3455		Escherichia coli MS 146-1 (1-50/51)			`MNHFIGGKSGGSIYYKPIQCPTGFIMTGTRMYGIGDGVDEEHVDAYCCPF`
Consen1		Primary consensus			`MNHFIGGKSGGSIYYKPIQCPTGyIMTGTRMYGIGDGVDEEHVDAYCCPFN`
Consen2		Secondary consensus			`f`

Consensus 1 (when a gap)

Conservative difference

Consensus 2 (when a gap)

Nonconservative diff.

Other character