fig|1040638.4.peg.542   Escherichia coli O104:H4 str. LB226692     MSITSCIVNAAVYNLFSPFYLIAAIYQWRCPVSTDSSSLIGAGPCQYTCFTFFLQVVAFPP
fig|6666666.5357.peg.4218   Escherichia coli TY-2482     MSITSCIVNAAVYNLFSPFYLIAAIYQWRCPVSTDSSSLIGAGPCQYTCFTFFLQVVAFPP
fig|431946.3.peg.4376   Escherichia coli SE15     MSITSCIVNAAVYNLFSPFYLIAAIYQWRCPVSTDSSSLIGAGPCQYTCFTFFLQVVAFPP
Consen1   Primary consensus     MSITSCIVNAAVYNLFSPFYLIAAIYQWRCPVSTDSSSLIGAGPCQYTCFTFFLQVVAFPP
Consen2   Secondary consensus                                                                  

Consensus 1 (when a gap)
Conservative difference
Consensus 2 (when a gap)
Nonconservative diff.
Other character