fig|1040638.4.peg.5371   Escherichia coli O104:H4 str. LB226692     MKKTAPDGAVSGMPAIRETGPGKXYXXXISIYGLWAK-------CRPDKAFTPHPAVVRHA
fig|656408.3.peg.5083   Escherichia coli H591     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTLILQYIESACFCRLDKAFTPHPA     
fig|331111.12.peg.4640   Escherichia coli E24377A     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTNKLQYIEFSRLCRPDKAFTPHPA     
fig|562.375.peg.96   Escherichia coli EC4100B     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTNKLQYIEFSRLCRPDKAFTPHPA     
fig|679204.3.peg.3421   Escherichia coli MS 145-7     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTLAVQSIDFAQFCRLDKAFTPHPA     
fig|656443.3.peg.263   Escherichia coli TA271     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTLAVQSIDFAQFCRLDKAFTPHPA     
fig|679206.4.peg.516   Escherichia coli MS 119-7     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTRILQYIEFAGFCRPDKAFTPHPA     
fig|656408.3.peg.3260   Escherichia coli H591     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTAAAR-------CVLDKAFTPHPARWR  
fig|679206.4.peg.4581   Escherichia coli MS 119-7     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTAAAR-------CVLDKAFTPHPARWR  
fig|656443.3.peg.3740   Escherichia coli TA271     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTAAAR-------CVLDKAFTPHPARWR  
fig|562.375.peg.4581   Escherichia coli EC4100B     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTRPLQYFEFARFCRPDKALVPHPA     
fig|656443.3.peg.1218   Escherichia coli TA271     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTRPLQYFEFARFCRPDKALVPHPA     
fig|679204.3.peg.2   Escherichia coli MS 145-7     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTQSLQYIEFGRFCRPGKAFTPHLA     
fig|340186.3.peg.1841   Escherichia coli E110019 (2-35/35)          PDATLTRL---------------ISIYGLWAK-------CRPDKAFTPHPAVVRHA
fig|562.375.peg.3222   Escherichia coli EC4100B (1-49/53)     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTNAPR--------RPDKAFTPHPATV   
fig|562.375.peg.3745   Escherichia coli EC4100B     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTPLLQYIEFLRFRRPDKAVTPHPA     
fig|340185.4.peg.2018   Escherichia coli E22                 MPAIRETGPGKNLQA-ITVSTRILQYIEFAGFCRPDKAFTPHPA     
Consen1   Primary consensus     MKKTAPDGAVSGMPAIRETGPGK    -Itvst   q   f    rpDKAftPHPArwRHA
Consen2   Secondary consensus                                  siyg       -    vl   lv    vv   

Consensus 1 (when a gap)
Conservative difference
Consensus 2 (when a gap)
Nonconservative diff.
Other character