fig|1040638.4.peg.5371   Escherichia coli O104:H4 str. LB226692     MKKTAPDGAVSGMPAIRETGPGKXYXXXISIYGLWAK-------CRPDKAFTPHPAVV--RHA
fig|656408.3.peg.5083   Escherichia coli H591     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTLILQYIESACFCRLDKAFTPHPA       
fig|679206.4.peg.516   Escherichia coli MS 119-7     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTRILQYIEFAGFCRPDKAFTPHPA       
fig|679204.3.peg.3421   Escherichia coli MS 145-7     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTLAVQSIDFAQFCRLDKAFTPHPA       
fig|562.375.peg.96   Escherichia coli EC4100B     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTNKLQYIEFSRLCRPDKAFTPHPA       
fig|331111.12.peg.4640   Escherichia coli E24377A     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTNKLQYIEFSRLCRPDKAFTPHPA       
fig|656443.3.peg.263   Escherichia coli TA271     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTLAVQSIDFAQFCRLDKAFTPHPA       
fig|656443.3.peg.3740   Escherichia coli TA271     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTAAAR-------CVLDKAFTPHPARW--R  
fig|656408.3.peg.3260   Escherichia coli H591     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTAAAR-------CVLDKAFTPHPARW--R  
fig|679206.4.peg.4581   Escherichia coli MS 119-7     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTAAAR-------CVLDKAFTPHPARW--R  
fig|656443.3.peg.1218   Escherichia coli TA271     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTRPLQYFEFARFCRPDKALVPHPA       
fig|562.375.peg.4581   Escherichia coli EC4100B     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTRPLQYFEFARFCRPDKALVPHPA       
fig|679204.3.peg.2   Escherichia coli MS 145-7     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTQSLQYIEFGRFCRPGKAFTPHLA       
fig|340186.3.peg.1841   Escherichia coli E110019         MPDATLTRL---------------ISIYGLWAK-------CRPDKAFTPHPAVV--RHA
fig|562.375.peg.3222   Escherichia coli EC4100B     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTNAPR--------RPDKAFTPHPATVPTRQ 
fig|562.375.peg.3745   Escherichia coli EC4100B     MKKTAPDGAVSGMPAIRETGPGKNLQA-ITVSTPLLQYIEFLRFRRPDKAVTPHPA       
fig|340185.4.peg.2018   Escherichia coli E22                 MPAIRETGPGKNLQA-ITVSTRILQYIEFAGFCRPDKAFTPHPA       
Consen1   Primary consensus     MKKTAPDGAVSGMPAIRETGPGK    -Itvst   q   f    rpDKAftPHPArw--RHA
Consen2   Secondary consensus                                  siyg       -    vl   lv    vv     

Consensus 1 (when a gap)
Conservative difference
Consensus 2 (when a gap)
Nonconservative diff.
Other character