fig|1040638.4.peg.523   Escherichia coli O104:H4 str. LB226692     MGENRNYHSQRINYFQH---------KKEKTMNLVDAFVKKVISGPYEEYGKWWIDVEYISWGVPGKTRLMFDSKEQALEVKEGYKFLT
fig|409438.11.peg.5011   Escherichia coli SE11     MGENINYHSQRINYFQH---------KKEKAMNLVDAFVKKVISGPYKEYGKWWIDVEYISWGVPGKTRLMFESKEQALEVKEGYKFLT
fig|595495.4.peg.4618   Escherichia coli KO11     MGENRNYHSQCIHYFRCALALIIFNIKRKKIMNLVDAFVKKVISGPYKEYGKWWIDVEYISWGVPGKTRLMFESKEQALEVKEGYKFLT
fig|566546.3.peg.3444   Escherichia coli W     MGENRNYHSQCIHYFRCALALIIFNIKRKKIMNLVDAFVKKVISGPYKEYGKWWIDVEYISWGVPGKTRLMFESKEQALEVKEGYKFLT
fig|566546.4.peg.4734   Escherichia coli W     MGENRNYHSQCIHYFRCALALIIFNIKRKKIMNLVDAFVKKVISGPYKEYGKWWIDVEYISWGVPGKTRLMFESKEQALEVKEGYKFLT
Consen1   Primary consensus     MGENRNYHSQcIhYFrcalaliifniKrkK MNLVDAFVKKVISGPYKEYGKWWIDVEYISWGVPGKTRLMFESKEQALEVKEGYKFLT
Consen2   Secondary consensus               r n  qh--------- ke                                                            

Consensus 1 (when a gap)
Conservative difference
Consensus 2 (when a gap)
Nonconservative diff.
Other character