fig|1040638.4.peg.48   Escherichia coli O104:H4 str. LB226692     MEYGFAIYNRNNVNVTGVLTPIFFLDRFTAESGSKTYTNKPEGKTLQAVCSLFPWNNVFKDRKVPKITINGNTVTWSNLEQGMGSYIYTFWG
fig|585395.4.peg.2953   Escherichia coli O103:H2 str. 12009     MEYGFAIYNRNNVNVTGVLTPIFFLDRFTAESGSKTYTNKPEGKTLQAVCSLFPWNNVFKDRKVPKITINGNTVTWSNLEQGMGSYIYTFWG
fig|1040638.4.peg.35   Escherichia coli O104:H4 str. LB226692     MEYGFAIYNRNNVNVTGVLTPVFFLDRFTAESGSKTYTNKPDGKSLQAVCCLFPWNNVFADRKVPKITINDNTVTWSNLEQGMGSYIYTFWG
fig|562.371.peg.1500   Escherichia coli 1044A     MEYGFAIYNRNNVNVTGVLTPVFFLDRFTAESGSKTYTNKPDGKSLQAVCCLFPWNNVFADRKVPKITINDNTVTWSNLEQGMGSYIYTFWG
fig|562.374.peg.353   Escherichia coli 536A     MEYGFAIYNRNNVNVTGVLTPVFFLDRFTAESGSKTYTNKPDGKSLQAVCCLFPWNNVFADRKVPKITINDNTVTWSNLEQGMGSYIYTFWG
fig|83334.1.peg.1290   Escherichia coli O157:H7     MEYGFAIYNRNNVNVTGVLTPVFFLDRFTAESGSKTYTNKPDGKSLQAVCCLFPWNNVFADRKVPKITINDNTVTWSNLEQGMGSYIYTFWG
Consen1   Primary consensus     MEYGFAIYNRNNVNVTGVLTPvFFLDRFTAESGSKTYTNKPdGKsLQAVCcLFPWNNVFaDRKVPKITINdNTVTWSNLEQGMGSYIYTFWG
Consen2   Secondary consensus                          i                   e  t     s        k          g                     

Consensus 1 (when a gap)
Conservative difference
Consensus 2 (when a gap)
Nonconservative diff.
Other character