fig|1040638.4.peg.1681   Escherichia coli O104:H4 str. LB226692     MVRNG-KST-----------AGHQRYLCSHCR--------------KHGNCSSLTPLLNPVRTRKSLIWP
fig|1040638.4.peg.4639   Escherichia coli O104:H4 str. LB226692     MVRNG-KST-----------AGHQRYLCSHCR--------------KHGNCSSLTPLLNPVRTRKSLIWP
fig|1040638.4.peg.2675   Escherichia coli O104:H4 str. LB226692     MVRNG-KST-----------AGHQRYLCSHCR--------------KHGNCSSLTPLLNPVRTRKSLIWP
fig|656393.3.peg.319   Escherichia coli H299     MYDGDFKVLAWLPFPSDVLPAPLLKAWCVTAKALPDISAISALTAVKHGNCSSLTPLLNPVRTRKSLIWP
fig|585397.6.peg.150   Escherichia coli ED1a     MYDGDFKVLAWLPFPSDVLPAPLLKAWCVTAKALPDISAISALIAVKHGNYSSLTPPLSPVRTRKSLIWP
fig|316401.4.peg.5295   Escherichia coli ETEC H10407     M-------LAWLPFPSDVLPAPLLKAWCVTAKALPDISAISALIAVKHGNYSSLTPPLSPVRTRKSLIWP
fig|749527.3.peg.1824   Escherichia coli MS 21-1     MYDGDFKVLAWLPFPSDVLPAPLLKAWCVTAKVLPDISAISALIAVKHGNYSSLTPPLSPVSTRKSLIWP
fig|1040638.4.peg.654   Escherichia coli O104:H4 str. LB226692     M-------LAWLPFPSDVLPAPLLKAWCVTAKALPDISAISALIAVKHGNYSSLTPPLSPVSTRKSLIWP
fig|749532.3.peg.3555   Escherichia coli MS 78-1     MYDGDFKVLAWLPFPSDVLPAPLLKAWCVTAKALPDISAISALIAVKHGNYSSLIPPLSPVSTRKSLIWP
fig|199310.1.peg.4404   Escherichia coli CFT073     MYDGDFKVLAWLPFPSDVLPAPLLKAWCVTAKALPDISAISALIAVKHGNYSSLTPPLSPVSTRKSLIWQ
Consen1   Primary consensus     M    -k lawlpfpsdvlpApllkawCvtakalpdisaisaliavKHGNySSLTPpLsPVrTRKSLIWP
Consen2   Secondary consensus          f- t----------- ghqryl shcr--------------    c     l n  s        

Consensus 1 (when a gap)
Conservative difference
Consensus 2 (when a gap)
Nonconservative diff.
Other character