fig|1040638.4.peg.4329   Escherichia coli O104:H4 str. LB226692     MPQGHRHQKRAGSDEIFHANLQVAAGFCLFCTPFQEGKMLDT--------------------------------AAAQTIRKA    
fig|478007.5.peg.4371   Escherichia coli O157:H7 str. EC508     MPQGHRHQKRAGSDEIFHAYLQVAAGFCLFCTPFQEGKMLDTLQRRQSESVTDTPLYSNVLFSENMYDLRLPAAPASVTVTSATAAN
Consen1   Primary consensus     MPQGHRHQKRAGSDEIFHA LQVAAGFCLFCTPFQEGKMLDT                                 A  T   A    
Consen2   Secondary consensus                                                                                            

Consensus 1 (when a gap)
Conservative difference
Consensus 2 (when a gap)
Nonconservative diff.
Other character