┌─ fig|1040638.4.peg.4142 O104:H4 str. LB226692   
                                                                    ├─ Escherichia coli 55989   
                                                                    ├─ Escherichia coli B7A   
                                                                    ├─ Escherichia coli MS 145-7   
                                                                   ┌┼─ Escherichia coli SE11   
                                                                   │├─ Escherichia coli MS 69-1   
                                                                   │├─ Escherichia coli B7A   
                                                                  ┌┤├─ Escherichia coli 55989   
                                                                  ││└─ fig|6666666.5357.peg.3628 TY-2482 strain   
                                                                  ││  ┌── Escherichia coli H299   
                                                                  │└┬─┴─── Escherichia coli B354   
                                                                  │ └─┬─ Escherichia coli 042   
                                                                 ┌┤   └─ Escherichia coli 042   
                                                                 ││ ┌─ Escherichia coli E24377A   
                                                                 ││ ├─ Escherichia coli IAI1   
                                                                 ││┌┼─ Escherichia coli IAI1   
                                                                 │││└─ Escherichia coli E24377A   
                                                                 │└┤┌─ Escherichia coli B171   
                                                                ┌┤ │├─ Escherichia coli E22   
                                                                ││ └┼─ Escherichia coli O103:H2 str. 12009   
                                                                ││  ├─ Escherichia coli E22   
                                                                ││  └─ Escherichia coli B171   
                                                                ││┌── Escherichia coli MS 115-1   
                                                                │││┌─ Escherichia coli O111:H- str. 11128   
                                                                │└┤│┌─ Escherichia coli E110019   
                                                                │ ││├─ Escherichia coli H591   
                                                                │ ││├─ Escherichia coli MS 107-1   
                                                                │ └┤├─ Escherichia coli MS 124-1   
                                                                │  │├─ Escherichia coli MS 78-1   
                                                               ┌┤  │├─ Escherichia coli O26:H11 str. 11368   
                                                               ││  │├─ Escherichia coli W   
                                                               ││  └┼─ Escherichia coli W   
                                                               ││   ├─ Escherichia coli TA271   
                                                               ││   ├─ Escherichia coli MS 84-1   
                                                               ││   ├─ Escherichia coli MS 182-1   
                                                              ┌┤│   ├─ Escherichia coli MS 119-7   
                                                              │││   ├─ Escherichia coli KO11   
                                                              │││   ├─ Escherichia coli EC4100B   
                                                              │││   └─ Escherichia coli E110019   
                                                             ┌┤│└─ Escherichia coli TA280   
                                                             ││└─ Escherichia coli TA143   
                                                             ││┌─ Escherichia coli ATCC 8739   
                                                             ││├─ Escherichia coli HS   
                                                            ┌┤└┼─ Escherichia coli HS   
                                                            ││ ├─ Escherichia coli ATCC 8739   
                                                            ││ └─ Escherichia coli 1827-70   
                                                            │└┬─ Escherichia coli 53638   
┌───────────────────────────────────────────────────────────┤ └─ Escherichia coli 53638   
│                                                           │┌─ Escherichia coli ETEC H10407   
│                                                           ││ ┌─ Escherichia coli MS 116-1   
│                                                           └┤┌┴─ Escherichia coli MS 175-1   
│                                                            ││┌─ Escherichia coli DH1   
│                                                            ││├─ Escherichia coli K12   
│                                                            └┤├─ Escherichia coli MS 196-1   
│                                                             │├─ Escherichia coli str. K-12 substr. DH10B   
│                                                             │├─ Escherichia coli str. K-12 substr. MG1655   
│                                                             └┼─ Escherichia coli str. K-12 substr. MG1655   
│                                                              ├─ Escherichia coli str. K-12 substr. DH10B   
│                                                              ├─ Escherichia coli W3110   
│                                                              ├─ Escherichia coli MS 146-1   
│                                                              ├─ Escherichia coli H736   
│                                                              └─ Escherichia coli BW2952   
│                                                              ┌─ Escherichia coli 1044A   
│                                                              ├─ Escherichia coli 1212A   
│                                                              ├─ Escherichia coli O157:H7 EDL933   
│                                                              ├─ Escherichia coli O157:H7 str. EC4042   
│                                                              ├─ Escherichia coli O157:H7 str. EC4076   
│                                                              ├─ Escherichia coli O157:H7 str. EC4115   
┤                                                              ├─ Escherichia coli O157:H7 str. EC4206   
│                                                              ├─ Escherichia coli O157:H7 str. EC4501   
│                                                              ├─ Escherichia coli O157:H7 str. EC869   
│                                                              ├─ Escherichia coli O157:H7 str. FRIK966   
│                                                              ├─ Escherichia coli O157:H7 str. TW14359   
│                                                             ┌┼─ Escherichia coli O55:H7 str. CB9615   
│                                                             │├─ Escherichia coli O157:H7 str. TW14588   
│                                                             │├─ Escherichia coli O157:H7 str. Sakai   
│                                                             │├─ Escherichia coli O157:H7 str. FRIK2000   
│                                                             │├─ Escherichia coli O157:H7 str. EC508   
│                                                             │├─ Escherichia coli O157:H7 str. EC4401   
│                                                            ┌┤├─ Escherichia coli O157:H7 str. EC4196   
│                                                            ││├─ Escherichia coli O157:H7 str. EC4113   
│                                                            ││├─ Escherichia coli O157:H7 str. EC4045   
│                                                            ││├─ Escherichia coli O157:H7 str. EC4024   
│                                                            ││├─ Escherichia coli 536A   
│                                                            ││└─ Escherichia coli 1125A   
│                                                            │└┬─ Escherichia coli (11-203/203) O157:H7 EDL933   
│                                                            │ └─ Escherichia coli (11-203/203) O157:H7   
│                                                            │  ┌─ Escherichia coli (11-203/203) B088   
│                                                            │  ├─ Escherichia coli (11-203/203) B7A   
└────────────────────────────────────────────────────────────┤  ├─ Escherichia coli (11-203/203) E22   
                                                             │ ┌┼─ Escherichia coli (11-203/203) HS   
                                                             │ │├─ Escherichia coli (11-203/203) E24377A   
                                                             │┌┤├─ Escherichia coli (11-203/203) E110019   
                                                             │││└─ Escherichia coli (11-203/203) B171   
                                                             ││└─ Escherichia coli B354   
                                                             ││┌─ Escherichia coli H736   
                                                             │││ ┌─ fig|1040638.4.peg.5593 O104:H4 str. LB226692   
                                                             │││ ├─ Escherichia coli 55989   
                                                             │││ ├─ Escherichia coli B171   
                                                             │││ ├─ Escherichia coli E110019   
                                                             └┤│ ├─ Escherichia coli E24377A   
                                                              ││ ├─ Escherichia coli HS   
                                                              ││ ├─ Escherichia coli IAI1   
                                                              ││ ├─ Escherichia coli MS 107-1   
                                                              ││ ├─ Escherichia coli MS 124-1   
                                                              ││ ├─ Escherichia coli MS 146-1   
                                                              ││ ├─ Escherichia coli MS 78-1   
                                                              ││ ├─ Escherichia coli O103:H2 str. 12009   
                                                              └┤ ├─ Escherichia coli O26:H11 str. 11368   
                                                               │ ├─ Escherichia coli TA271   
                                                               │┌┼─ Escherichia coli W   
                                                               ││├─ Escherichia coli W   
                                                               ││├─ Escherichia coli SE11   
                                                               ││├─ Escherichia coli O111:H- str. 11128   
                                                               ││├─ Escherichia coli MS 84-1   
                                                               ││├─ Escherichia coli MS 182-1   
                                                               ││├─ Escherichia coli MS 145-7   
                                                               ││├─ Escherichia coli MS 119-7   
                                                               ││├─ Escherichia coli KO11   
                                                               ││├─ Escherichia coli IAI1   
                                                               ││├─ Escherichia coli H591   
                                                               └┤├─ Escherichia coli E22   
                                                                │├─ Escherichia coli B7A   
                                                                │├─ Escherichia coli 55989   
                                                                │└─ fig|6666666.5357.peg.1594 TY-2482 strain   
                                                                │  ┌─ Escherichia coli 042   
                                                                │┌─┴─ Escherichia coli (11-203/203) 042   
                                                                ││      ┌─ Escherichia coli 101-1   
                                                                ││      ├─ Escherichia coli B str. REL606   
                                                                ││      ├─ Escherichia coli (DE3) BL21(DE3)   
                                                                ││     ┌┼─ Escherichia coli OP50   
                                                                ││     │├─ Escherichia coli MS 187-1   
                                                                ││    ┌┤├─ Escherichia coli BL21   
                                                                └┤    ││└─ Escherichia coli 53638   
                                                                 │   ┌┤└─ Escherichia coli (11-203/203) 53638   
                                                                 │  ┌┤└─ Escherichia coli ETEC H10407   
                                                                 │ ┌┤└─ Escherichia coli EC4100B   
                                                                 │┌┤└─ Escherichia coli MS 115-1   
                                                                 ││└─┬─ Escherichia coli (11-203/203) ATCC 8739   
                                                                 ││  └─ Escherichia coli ATCC 8739   
                                                                 └┤┌── Escherichia coli MS 69-1   
                                                                  ││┌─ Escherichia coli (11-203/203) E2348/69   
                                                                  │││      ┌─ Escherichia coli 1827-70   
                                                                  │││      ├─ Escherichia coli DH1   
                                                                  └┤│      ├─ Escherichia coli str. K-12 substr. DH10B   
                                                                   ││     ┌┼─ Escherichia coli str. K-12 substr. MG1655   
                                                                   ││     │├─ Escherichia coli str. K-12 substr. MG1655   
                                                                   ││   ┌─┤├─ Escherichia coli W3110   
                                                                   ││   │ │└─ Escherichia coli BW2952   
                                                                   └┤  ┌┤ └┬─ Escherichia coli (11-203/203) str. K-12 substr. DH10B   
                                                                    │  ││  └─ Escherichia coli (11-203/203) K12   
                                                                    │ ┌┤└┬─ Escherichia coli IAI39   
                                                                    │ ││ └─ Escherichia coli IAI39   
                                                                    │┌┤└── Escherichia coli TA143   
                                                                    ││└── Escherichia coli B185   
                                                                    ││ ┌─ Escherichia coli 2362-75   
                                                                    ││ ├─ Escherichia coli MS 21-1   
                                                                    └┤┌┼─ Escherichia coli WV_060327   
                                                                     ││├─ Escherichia coli SE15   
                                                                     ││└─ Escherichia coli H299   
                                                                     ││┌─ Escherichia coli M605   
                                                                     └┤│  ┌─ Escherichia coli ED1a   
                                                                      ││  ├─ Escherichia coli FVEC1302   
                                                                      ││  ├─ Escherichia coli MS 198-1   
                                                                      ││ ┌┼─ Escherichia coli UMN026   
                                                                      └┤ │├─ Escherichia coli TA280   
                                                                       │┌┤├─ Escherichia coli FVEC1412   
                                                                       │││└─ Escherichia coli ED1a   
                                                                       ││└─── Escherichia coli SMS-3-5   
                                                                       ││  ┌─ Escherichia coli M718   
                                                                       └┤  ├─ Escherichia coli MS 175-1   
                                                                        │┌─┼─ Escherichia coli MS 196-1   
                                                                        ││ └─ Escherichia coli MS 116-1   
                                                                        ││  ┌─ Escherichia coli F11   
                                                                        └┤ ┌┴─ Escherichia coli MS 200-1   
                                                                         │┌┴─ Escherichia coli (11-203/203) F11   
                                                                         ││  ┌─ Escherichia coli (11-203/203) APEC O1   
                                                                         ││ ┌┴─ Escherichia coli (11-203/203) CFT073   
                                                                         └┤┌┴─ Escherichia coli TA206   
                                                                          ││┌─ Escherichia coli 536   
                                                                          ││├─ Escherichia coli ABU 83972   
                                                                          ││├─ Escherichia coli CFT073   
                                                                          └┤├─ Escherichia coli MS 185-1   
                                                                           │├─ Escherichia coli NC101   
                                                                           │├─ Escherichia coli S88   
                                                                           │├─ Escherichia coli UTI89   
                                                                           └┼─ Escherichia coli UTI89   
                                                                            ├─ Escherichia coli UM146   
                                                                            ├─ Escherichia coli O83:H1 str. NRG 857C   
                                                                            ├─ Escherichia coli MS 45-1   
                                                                            ├─ Escherichia coli IHE3034   
                                                                            ├─ Escherichia coli APEC O1   
                                                                            ├─ Escherichia coli 83972   
                                                                            └─ Escherichia coli 536   
  
Carnitine operon protein CaiE (130)
Phenylacetic acid degradation protein PaaY (60)
Others (4)