┌─ Escherichia coli (1-38/256) 1044A   
                                                                     ├─ Escherichia coli (1-38/256) 1212A   
                                                                     ├─ Escherichia coli (1-38/256) O103:H2 str. 12009   
                                                                     ├─ Escherichia coli (1-38/256) O157:H7 EDL933   
                                                                     ├─ Escherichia coli (1-38/256) O157:H7 str. EC4024   
                                                                     ├─ Escherichia coli (1-38/256) O157:H7 str. EC4045   
                                                                     ├─ Escherichia coli (1-38/256) O157:H7 str. EC4113   
                                                                     ├─ Escherichia coli (1-38/256) O157:H7 str. EC4196   
                                                                     ├─ Escherichia coli (1-38/256) O157:H7 str. EC4486   
                                                                     ├─ Escherichia coli (1-38/256) O157:H7 str. EC508   
                                                                     ├─ Escherichia coli (1-38/256) O157:H7 str. Sakai   
                                                                     ├─ Escherichia coli (1-38/256) O157:H7 str. TW14588   
                                                                    ┌┼─ Escherichia coli (1-38/75) O157:H7 str. FRIK966   
                                                                    │├─ Escherichia coli (1-38/256) O157:H7 str. TW14359   
                                                                    │├─ Escherichia coli (1-38/256) O157:H7 str. EC869   
                                                                    │├─ Escherichia coli (1-38/256) O157:H7 str. EC4501   
                                                                    │├─ Escherichia coli (1-38/256) O157:H7 str. EC4206   
                                                                    │├─ Escherichia coli (1-38/256) O157:H7 str. EC4115   
                                                                    │├─ Escherichia coli (1-38/256) O157:H7 str. EC4076   
                                                                    │├─ Escherichia coli (1-38/256) O157:H7 str. EC4042   
                                                           ┌────────┤├─ Escherichia coli (1-38/256) O157:H7 EDL933   
                                                           │        │├─ Escherichia coli (1-38/256) O157:H7   
                                                           │        │├─ Escherichia coli (1-38/256) 536A   
                                                           │        │└─ Escherichia coli (1-38/256) 1125A   
                                                           │        │┌─ Escherichia coli (1-39/224) E22   
                                                           │        │├─ Escherichia coli (1-39/256) ED1a   
                                                           │        │├─ Escherichia coli (1-39/256) MS 145-7   
                                                           │        │├─ Escherichia coli (1-39/96) E110019   
                                                           │        └┼─ Escherichia coli (1-39/96) E110019   
                                                           │         ├─ Escherichia coli (1-39/256) MS 21-1   
                                                           │         ├─ Escherichia coli (1-39/256) O26:H11 str. 11368   
                                                           │         ├─ Escherichia coli (1-39/256) ED1a   
                                             ┌─────────────┤         └─ Escherichia coli (1-39/224) E22   
                                             │             │┌─ Escherichia coli (1-39/238) 1125A   
                                             │             │├─ Escherichia coli (1-39/238) 536A   
                                             │             │├─ Escherichia coli (1-39/238) O157:H7 EDL933   
                                             │             │├─ Escherichia coli (1-39/238) O157:H7 str. EC4042   
                                             │             │├─ Escherichia coli (1-39/238) O157:H7 str. EC4076   
                                             │             │├─ Escherichia coli (1-39/238) O157:H7 str. EC4115   
                                             │             │├─ Escherichia coli (1-39/238) O157:H7 str. EC4206   
                                             │             │├─ Escherichia coli (1-39/238) O157:H7 str. EC4486   
                                             │             │├─ Escherichia coli (1-39/238) O157:H7 str. EC869   
                                             │             │├─ Escherichia coli (1-39/238) O157:H7 str. FRIK966   
                                             │             │├─ Escherichia coli (1-39/238) O157:H7 str. TW14359   
                                             │             └┼─ Escherichia coli (1-39/238) O157:H7 EDL933   
                                        ┌────┤              ├─ Escherichia coli (1-39/238) O157:H7 str. TW14588   
                                        │    │              ├─ Escherichia coli (1-39/238) O157:H7 str. Sakai   
                                        │    │              ├─ Escherichia coli (1-39/238) O157:H7 str. FRIK2000   
                                        │    │              ├─ Escherichia coli (1-39/238) O157:H7 str. EC4501   
                                        │    │              ├─ Escherichia coli (1-39/238) O157:H7 str. EC4401   
                                        │    │              ├─ Escherichia coli (1-39/238) O157:H7 str. EC4196   
                                        │    │              ├─ Escherichia coli (1-39/238) O157:H7 str. EC4113   
                                        │    │              ├─ Escherichia coli (1-39/238) O157:H7 str. EC4045   
                                        │    │              ├─ Escherichia coli (1-39/238) O157:H7 str. EC4024   
                                        │    │              ├─ Escherichia coli (1-39/238) O157:H7   
                                        │    │              ├─ Escherichia coli (1-39/238) 1212A   
                                        │    │              └─ Escherichia coli (1-39/238) 1044A   
                                        │    │┌─ Escherichia coli (1-39/241) ED1a   
                                        │    └┼─ Escherichia coli (1-39/241) O26:H11 str. 11368   
                               ┌────────┤     ├─ Escherichia coli (1-39/211) O103:H2 str. 12009   
                               │        │     └─ Escherichia coli (1-39/241) ED1a   
                               │        │    ┌─ Escherichia coli (1-39/238) 1044A   
                               │        │    ├─ Escherichia coli (1-39/238) 1212A   
                               │        │    ├─ Escherichia coli (1-39/238) O157:H7 str. EC4042   
                               │        │    ├─ Escherichia coli (1-39/238) O157:H7 str. EC4076   
                               │        │    ├─ Escherichia coli (1-39/238) O157:H7 str. EC4115   
                               │        │    ├─ Escherichia coli (1-39/238) O157:H7 str. EC4206   
                               │        │    ├─ Escherichia coli (1-39/238) O157:H7 str. EC508   
                               │        │    ├─ Escherichia coli (1-39/238) O157:H7 str. FRIK2000   
                               │        │    ├─ Escherichia coli (1-39/238) O157:H7 str. Sakai   
                               │        │    ├─ Escherichia coli (1-39/238) O157:H7 str. TW14588   
                               │        │    ├─ Escherichia coli (1-39/238) O111:H- str. 11128   
                               │        │    ├─ Escherichia coli (1-39/85) O157:H7 EDL933   
                               │        └────┼─ Escherichia coli (1-39/51) O157:H7 str. EC4486   
                               │             ├─ Escherichia coli (1-39/85) O157:H7 EDL933   
                               │             ├─ Escherichia coli (7-45/244) O157:H7   
                               │             ├─ Escherichia coli (1-39/238) O103:H2 str. 12009   
                               │             ├─ Escherichia coli (1-39/238) O157:H7 str. TW14359   
                               │             ├─ Escherichia coli (1-39/238) O157:H7 str. FRIK966   
                               │             ├─ Escherichia coli (1-39/238) O157:H7 str. EC869   
           ┌───────────────────┤             ├─ Escherichia coli (1-39/238) O157:H7 str. EC4501   
           │                   │             ├─ Escherichia coli (1-39/238) O157:H7 str. EC4196   
           │                   │             ├─ Escherichia coli (1-39/238) O157:H7 str. EC4113   
           │                   │             ├─ Escherichia coli (1-39/238) O157:H7 str. EC4045   
           │                   │             ├─ Escherichia coli (1-39/238) 536A   
           │                   │             ├─ Escherichia coli (1-39/238) 1125A   
           │                   │             └─ Escherichia coli (1-39/164) O157:H7 str. EC4401   
           │                   │                    ┌─ Escherichia coli (1-39/232) E110019   
           │                   │                    ├─ Escherichia coli (1-39/232) 1044A   
           │                   │                    ├─ Escherichia coli (1-39/232) 1212A   
           │                   │                    ├─ Escherichia coli (1-39/232) O157:H7   
           │                   │                    ├─ Escherichia coli (1-39/232) O157:H7 str. EC4024   
           │                   │                    ├─ Escherichia coli (1-39/232) O157:H7 str. EC4045   
           │                   │                    ├─ Escherichia coli (1-39/232) O157:H7 str. EC4113   
           │                   │                    ├─ Escherichia coli (1-39/232) O157:H7 str. EC4196   
           │                   │                    ├─ Escherichia coli (1-39/232) O157:H7 str. EC4401   
           │                   │                    ├─ Escherichia coli (1-39/232) O157:H7 str. EC4501   
           │                   │                    ├─ Escherichia coli (1-39/232) O157:H7 str. EC869   
┌──────────┤                   │                    ├─ Escherichia coli (1-39/232) O157:H7 str. FRIK966   
│          │                   │                    ├─ Escherichia coli (1-39/232) O157:H7 str. TW14359   
│          │                   └────────────────────┼─ Escherichia coli (23-61/254) O157:H7 EDL933   
│          │                                        ├─ Escherichia coli (1-39/232) O157:H7 str. TW14588   
│          │                                        ├─ Escherichia coli (1-39/232) O157:H7 str. Sakai   
│          │                                        ├─ Escherichia coli (1-39/232) O157:H7 str. FRIK2000   
│          │                                        ├─ Escherichia coli (1-39/232) O157:H7 str. EC508   
│          │                                        ├─ Escherichia coli (1-39/232) O157:H7 str. EC4486   
│          │                                        ├─ Escherichia coli (1-39/232) O157:H7 str. EC4206   
│          │                                        ├─ Escherichia coli (1-39/232) O157:H7 str. EC4115   
│          │                                        ├─ Escherichia coli (1-39/232) O157:H7 str. EC4076   
│          │                                        ├─ Escherichia coli (1-39/232) O157:H7 str. EC4042   
│          │                                        ├─ Escherichia coli (1-39/232) O157:H7 EDL933   
│          │                                        ├─ Escherichia coli (1-39/232) 536A   
│          │                                        ├─ Escherichia coli (1-39/232) 1125A   
│          │                                        ├─ Escherichia coli (1-39/232) O26:H11 str. 11368   
┤          │                                        └─ Escherichia coli (1-39/232) E110019   
│          │            ┌─ Escherichia coli (23-61/192) 53638   
│          └────────────┼─ Escherichia coli (1-39/170) 53638   
│                       └─ Escherichia coli (1-39/241) MS 182-1   
│                                      ┌─ Escherichia coli (1-39/253) 53638   
│                                     ┌┴─ Escherichia coli (1-39/253) 53638   
│                                     │      ┌─ Escherichia coli (1-39/186) BW2952   
│                                     │      ├─ Escherichia coli (1-39/186) W3110   
│                                     │      ├─ Escherichia coli (1-39/186) str. K-12 substr. DH10B   
│                                     │      ├─ Escherichia coli (1-39/186) str. K-12 substr. MG1655   
│                                     │      ├─ Escherichia coli (1-39/253) M605   
│                                     │      ├─ Escherichia coli (1-39/253) E24377A   
│                                     │      ├─ Escherichia coli (1-39/253) MS 124-1   
│                                     │      ├─ Escherichia coli (1-39/253) O26:H11 str. 11368   
│                                     │      ├─ Escherichia coli (1-39/253) KO11   
│                                     │      ├─ Escherichia coli (1-39/253) W   
└─────────────────────────────────────┤     ┌┼─ Escherichia coli (18-56/270) M718   
                                      │     │├─ Escherichia coli (1-39/253) W   
                                      │     │├─ Escherichia coli (18-56/270) SE11   
                                      │     │├─ Escherichia coli (1-39/253) MS 84-1   
                                      │     │├─ Escherichia coli (1-39/253) MS 69-1   
                                      │    ┌┤├─ Escherichia coli (1-39/253) E24377A   
                                      │    ││├─ Escherichia coli (18-56/203) K12   
                                      │    ││├─ Escherichia coli (1-39/186) str. K-12 substr. MG1655   
                                      │    ││├─ Escherichia coli (1-39/186) str. K-12 substr. DH10B   
                                      │    ││└─ Escherichia coli (1-39/186) DH1   
                                      │    │└───── Escherichia coli (1-39/253) TA143   
                                      │    │    ┌───── Escherichia coli (1-39/248) O103:H2 str. 12009   
                                      └────┤    │      ┌─ Escherichia coli (1-39/248) WV_060327   
                                           │    │      ├─ Escherichia coli (1-39/253) O157:H7 EDL933   
                                           │    │      ├─ Escherichia coli (1-39/253) O157:H7 str. Sakai   
                                           │    │      ├─ Escherichia coli (18-56/270) O157:H7   
                                           │    │     ┌┼─ Escherichia coli (18-56/270) O157:H7 EDL933   
                                           │    │     │├─ Escherichia coli (1-39/253) O157:H7 str. TW14588   
                                           │    │┌────┤├─ Escherichia coli (1-39/253) O157:H7 str. EC4501   
                                           └────┤│    │└─ Escherichia coli (1-39/253) 1044A   
                                                ││    └────────── Escherichia coli (1-39/256) TA280   
                                                ││      ┌─ Escherichia coli (1-39/256) 83972   
                                                ││      ├─ Escherichia coli (1-39/253) 101-1   
                                                ││      ├─ Escherichia coli (1-39/256) 55989   
                                                ││      ├─ Escherichia coli (1-39/256) FVEC1302   
                                                ││      ├─ Escherichia coli (1-39/256) MS 198-1   
                                                ││      ├─ Escherichia coli (1-39/256) UMN026   
                                                ││     ┌┼─ Escherichia coli (7-45/262) 042   
                                                └┤     │├─ Escherichia coli (1-39/256) MS 196-1   
                                                 │     │├─ Escherichia coli (1-39/256) MS 69-1   
                                                 │     │├─ Escherichia coli (1-39/256) FVEC1412   
                                                 │┌────┤├─ Escherichia coli (1-39/256) 55989   
                                                 ││    │├─ Escherichia coli (1-39/256) 042   
                                                 ││    │└─ Escherichia coli (1-39/256) ABU 83972   
                                                 ││    └───── Escherichia coli (1-39/256) SMS-3-5   
                                                 ││ ┌─ Escherichia coli (1-39/253) B088   
                                                 ││ ├─ Escherichia coli (1-39/253) APEC O1   
                                                 ││ ├─ Escherichia coli (1-39/244) O55:H7 str. CB9615   
                                                 ││ ├─ Escherichia coli (1-39/253) 101-1   
                                                 └┤ ├─ Escherichia coli (18-56/270) APEC O1   
                                                  │ ├─ Escherichia coli (1-39/253) TA280   
                                                  │┌┼─ Escherichia coli (1-39/199) B185   
                                                  ││├─ Escherichia coli (1-39/195) O26:H11 str. 11368   
                                                  ││├─ Escherichia coli (18-56/270) E22   
                                                  ││├─ Escherichia coli (18-56/270) 042   
                                                  ││├─ Escherichia coli (1-39/244) O111:H- str. 11128   
                                                  ││├─ Escherichia coli (1-39/253) E22   
                                                  ││└─ Escherichia coli (1-39/253) 042   
                                                  └┤     ┌─ Escherichia coli (1-39/253) 1212A   
                                                   │┌────┴─ Escherichia coli (1-39/253) 536A   
                                                   ││                    ┌─ Escherichia coli (1-39/256) O157:H7 str. EC4024   
                                                   ││                    ├─ Escherichia coli (1-39/256) O157:H7 str. EC4045   
                                                   ││                    ├─ Escherichia coli (1-39/256) O157:H7 str. EC4115   
                                                   ││                    ├─ Escherichia coli (1-39/256) O157:H7 str. EC4206   
                                                   ││                    ├─ Escherichia coli (1-39/256) O157:H7 str. TW14359   
                                                   ││                ┌───┼─ Escherichia coli (1-39/252) O157:H7 str. FRIK966   
                                                   └┤                │   ├─ Escherichia coli (1-39/256) O157:H7 str. EC508   
                                                    │                │   ├─ Escherichia coli (1-39/256) O157:H7 str. EC4115   
                                                    │               ┌┤   ├─ Escherichia coli (1-39/256) O157:H7 str. EC4113   
                                                    │               ││   └─ Escherichia coli (1-39/256) O157:H7 str. EC4042   
                                                    │              ┌┤└───── Escherichia coli (1-35/252) O157:H7 str. EC4196   
                                                    │              │└─ fig|1040638.4.peg.274 O104:H4 (1-29/49) str. LB226692   
                                                    │              │      ┌─ Escherichia coli (1-39/256) O55:H7 str. CB9615   
                                                    │              │ ┌────┴─ Escherichia coli (1-39/256) O103:H2 str. 12009   
                                                    └──────────────┤┌┴───── Escherichia coli (1-39/253) O26:H11 str. 11368   
                                                                   ││┌─ fig|1040638.4.peg.388 O104:H4 str. LB226692   
                                                                   │││┌─ Escherichia coli (1-39/256) ED1a   
                                                                   │││├─ Escherichia coli (1-39/256) O103:H2 str. 12009   
                                                                   └┤│├─ Escherichia coli (1-39/256) O157:H7 str. TW14588   
                                                                    ││├─ Escherichia coli (1-39/75) O157:H7 str. FRIK2000   
                                                                    ││├─ Escherichia coli (1-39/59) 1125A   
                                                                    ││├─ Escherichia coli (1-39/59) 536A   
                                                                    ││├─ Escherichia coli (1-39/59) O157:H7 EDL933   
                                                                    └┤├─ Escherichia coli (1-39/59) O157:H7 str. EC4024   
                                                                     │├─ Escherichia coli (1-39/59) O157:H7 str. EC4045   
                                                                     │├─ Escherichia coli (1-39/59) O157:H7 str. EC4113   
                                                                     │├─ Escherichia coli (1-39/59) O157:H7 str. EC4196   
                                                                     │├─ Escherichia coli (1-39/59) O157:H7 str. EC4401   
                                                                     │├─ Escherichia coli (1-39/59) O157:H7 str. EC4501   
                                                                     │├─ Escherichia coli (1-39/59) O157:H7 str. EC869   
                                                                     │├─ Escherichia coli (1-39/59) O157:H7 str. FRIK966   
                                                                     │├─ Escherichia coli (1-39/59) O157:H7 str. TW14359   
                                                                     └┼─ Escherichia coli (1-39/59) O157:H7 str. TW14588   
                                                                      ├─ Escherichia coli (1-39/59) O157:H7 str. Sakai   
                                                                      ├─ Escherichia coli (1-39/59) O157:H7 str. FRIK2000   
                                                                      ├─ Escherichia coli (1-39/59) O157:H7 str. EC508   
                                                                      ├─ Escherichia coli (1-39/59) O157:H7 str. EC4486   
                                                                      ├─ Escherichia coli (1-39/59) O157:H7 str. EC4206   
                                                                      ├─ Escherichia coli (1-39/59) O157:H7 str. EC4115   
                                                                      ├─ Escherichia coli (1-39/59) O157:H7 str. EC4076   
                                                                      ├─ Escherichia coli (1-39/59) O157:H7 str. EC4042   
                                                                      ├─ Escherichia coli (1-39/59) O157:H7 EDL933   
                                                                      ├─ Escherichia coli (1-39/59) O157:H7   
                                                                      ├─ Escherichia coli (1-39/59) 1212A   
                                                                      ├─ Escherichia coli (1-39/59) 1044A   
                                                                      ├─ fig|6666666.5357.peg.2984 TY-2482 (1-39/256) strain   
                                                                      ├─ Escherichia coli (1-39/256) O157:H7 str. EC4501   
                                                                      ├─ Escherichia coli (1-39/253) O26:H11 str. 11368   
                                                                      └─ Escherichia coli (1-39/256) ED1a   
  
hypothetical protein (216)
Phage protein (4)
unknown protein encoded by cryptic prophage CP-933P (1)
unknown protein encoded within prophage CP-933U (1)
Uncharacterized protein ydaW (1)
unknown protein encoded within prophage CP-933O (1)
unknown protein encoded by cryptic prophage CP-933M (1)
unknown protein encoded by prophage CP-933N (1)
Others (3)