fig|1040638.4.peg.3788   Escherichia coli O104:H4 str. LB226692     MWQAIRRLLSEQLGEGEIELRNELPGGEVHAAWHLRYAGHDFFVKCDERELLPGFTAEADQLELLSRSKTVTVPKVWAVGADRDYSFLVMDYLPPRPLDAHSAFILGQQIARLHQWSDQPQFGLDFDNSLSTTPQPNTWQRRWSTFFAEQRIGWQLELAAEKGIAFGNIDAIVEHIQQRLASHQPQ--PSLLHGDLWSGNCALGPDGPYIFDPACY-W--------------VTESATWRCYRCILNSRHKSMTAISQYPRYLPISLNVNRFTNSTRC
fig|656440.3.peg.1644   Escherichia coli TA206     MWQAISRLLSEQLGEGEIELRNELPGGEVHAAWHLRYAGRDFFVKCDERELLPGFTAEADQLELLSRSKTVTVPKVWAVGADRDYSFLVMDYLPPRPLDAHSAFILGQQIARLHQWSDQPQFGLDFDNALSTTPQPNTWQRRWSTFFAEQRIGWQLELAAEK----GSLSAISMPSSSIFSSVSPRINRSLL--------CCTA-----IYGPATVRWVRMARTFSTRPVTGVTESATWRCYRCILNSRHKSMTAISQYPRYLPISLNVNRFTNSTRC
Consen1   Primary consensus     MWQAI RLLSEQLGEGEIELRNELPGGEVHAAWHLRYAG DFFVKCDERELLPGFTAEADQLELLSRSKTVTVPKVWAVGADRDYSFLVMDYLPPRPLDAHSAFILGQQIARLHQWSDQPQFGLDFDN LSTTPQPNTWQRRWSTFFAEQRIGWQLELAAEK    G   AI         S  P    SLL        C        I  PA   W              VTESATWRCYRCILNSRHKSMTAISQYPRYLPISLNVNRFTNSTRC
Consen2   Secondary consensus                                                                                                                                                                                                                                                                                           

Consensus 1 (when a gap)
Conservative difference
Consensus 2 (when a gap)
Nonconservative diff.
Other character