fig|6666666.5357.peg.1067   Escherichia coli TY-2482     ML----------PTDELVKSGVIPVALQKWAIPLKECHHGDEPLYYQV
fig|1040638.4.peg.354   Escherichia coli O104:H4 str. LB226692     ML----------PTDELVKSGVIPVALQKWAIPLKECHHGDEPLYYQV
fig|585397.6.peg.93   Escherichia coli ED1a     MIRHSIKKHRVLPTDELVKSGVIPVALQKWVIPLKECHHGDEPLYYQV
fig|585055.8.peg.5153   Escherichia coli 55989     ML----------PTDELVKSGVIPVALQKWVIPLKECHHGDEPLYYQV
fig|216592.3.peg.5101   Escherichia coli 042     ML----------PIDELVKSGVIQVALQKWAIPLKGCHHGDESLSYQ 
Consen1   Primary consensus     ML----------PTDELVKSGVIPVALQKWaIPLKECHHGDEPLYYQV
Consen2   Secondary consensus                                   v                 

Consensus 1 (when a gap)
Conservative difference
Consensus 2 (when a gap)
Nonconservative diff.
Other character