fig|1040638.4.peg.350   Escherichia coli O104:H4 str. LB226692 (3-37/37)     m----------------y--------------------------------AIKPREIINYDAGIVLIDLRQINVKATSDNTNQQH
fig|6666666.5357.peg.4152   Escherichia coli TY-2482 (3-37/37)     m----------------y--------------------------------AIKPREIINYDAGIVLIDLRQINVKATSDNTNQQH
fig|344601.5.peg.5022   Escherichia coli B171 (3-37/37)     m----------------y--------------------------------AIKPREIINYDAGIVLIDLRQINVKATSDNTNQQH
fig|701177.3.peg.2463   Escherichia coli O55:H7 str. CB9615 (3-37/37)     m----------------y--------------------------------AIKPREIINYDAGIVLIDLRQINVKATSDNTNQQH
fig|670897.3.peg.4409   Escherichia coli 2362-75 (3-37/37)     m----------------y--------------------------------AIKPREIINYDAGIVLIDLRQINVKATSDNTNQQH
fig|585035.6.peg.564   Escherichia coli S88 (3-37/37)     m----------------y--------------------------------AIKPREIINYDAGIVLIDLHQINVKATSDNTNQQH
fig|749527.3.peg.2045   Escherichia coli MS 21-1 (3-37/37)     m----------------y--------------------------------AIKPREIINYDAGIVLIDLHQINVKATSDNTNQQH
fig|573235.3.peg.1165   Escherichia coli O26:H11 str. 11368 (3-37/37)     m----------------y--------------------------------AIKPREIINYYAGIVLIDLHQISVKATSDNTNQQH
fig|585395.4.peg.824   Escherichia coli O103:H2 str. 12009 (3-37/37)     m----------------y--------------------------------AIKPREIINYYAGIVLIDLHQISVKATSDNTNQQH
fig|344601.5.peg.4626   Escherichia coli B171 (3-37/37)     m----------------y--------------------------------AIKPREIINYYAGIVLIDLHQISVKATSDNTNQQH
fig|340186.5.peg.3383   Escherichia coli E110019 (3-37/37)     m----------------y--------------------------------AIKPREIINYYAGIVLIDLHQISVKATSDNTNQQH
fig|749533.3.peg.3098   Escherichia coli MS 84-1 (51-85/85)     mtkkngnalnrkifinsenprgrrpvtcriagkdpqndnnyhlhvttciyAIKPRQIINYDAGIVLIDPHQLNVKTTSDNTNQRH
fig|536056.3.peg.2205   Escherichia coli DH1 (3-37/37)     m----------------e--------------------------------AIKPRQIINYDAGIVLIDLHQLNVKTTSDNTNQRH
fig|511145.12.peg.1619   Escherichia coli str. K-12 substr. MG1655 (3-37/37)     m----------------e--------------------------------AIKPRQIINYDAGIVLIDLHQLNVKTTSDNTNQRH
fig|511145.6.peg.1604   Escherichia coli str. K-12 substr. MG1655 (3-37/37)     m----------------e--------------------------------AIKPRQIINYDAGIVLIDLHQLNVKTTSDNTNQRH
fig|511693.5.peg.781   Escherichia coli BL21 (3-37/37)     m----------------e--------------------------------AIKPRQIINYDAGIVLIDLHQLNVKTTSDNTNQRH
fig|469008.4.peg.2976   Escherichia coli BL21(DE3) (3-37/37)     m----------------e--------------------------------AIKPRQIINYDAGIVLIDLHQLNVKTTSDNTNQRH
fig|595496.3.peg.1509   Escherichia coli BW2952 (3-37/37)     m----------------e--------------------------------AIKPRQIINYDAGIVLIDLHQLNVKTTSDNTNQRH
Consen1   Primary consensus     M----------------y--------------------------------AIKPReIINYdAGIVLIDLhQinVKaTSDNTNQqH
Consen2   Secondary consensus                      e                                     q    y        r ls  t       r 

Consensus 1 (when a gap)
Conservative difference
Consensus 2 (when a gap)
Nonconservative diff.
Other character