fig|1040638.4.peg.333   Escherichia coli O104:H4 str. LB226692     MFKCHGSFHHLKNDSLKYLTCNTEKTQNHTLIKNLIIKQICMDKLQDEI
fig|749549.3.peg.291   Escherichia coli MS 198-1     MFKCHGSFHHLKNDSLKYLTCNTEKTQNHTLNKNLIIKQICMDKLQDEI
fig|749531.3.peg.195   Escherichia coli MS 69-1     MFKCHGSFHHLKNDSLKYLTCNTEKTQNHTLNKNLIIKQICMDKLQDEI
fig|199310.1.peg.1382   Escherichia coli CFT073     MFKCHGSFHYLKNNSLKYLTCNTEKTQNYTLNKNLIIKQICMDKLQDEI
fig|199310.4.peg.1350   Escherichia coli CFT073     MFKCHGSFHYLKNNSLKYLTCNTEKTQNYTLNKNLIIKQICMDKLQDEI
fig|749528.3.peg.794   Escherichia coli MS 45-1     MFKCHGSFHYLKNNSLKYLTCNTEKTQNYTLNKNLIIKQICMDKLQDEI
fig|749548.3.peg.1819   Escherichia coli MS 196-1     MFKCHGSFHHLKNNSLKYLTCNTEKTQNHTLNKNLIIKQICMDKLQDEI
Consen1   Primary consensus     MFKCHGSFHhLKNnSLKYLTCNTEKTQNhTLNKNLIIKQICMDKLQDEI
Consen2   Secondary consensus              y   d              y                    

Consensus 1 (when a gap)
Conservative difference
Consensus 2 (when a gap)
Nonconservative diff.
Other character