fig|1040638.4.peg.3112
Escherichia coli O104:H4 str. LB226692
MKKILYVTGSRAEYGI
MK
RLL
QQ
L
K
E
DD
S
I
D
L
SI
V
A
TGMHCD
K
K
YG
M
T
YK
V
IE
N
D
G
F
R
V
D
K
I
I
DI
E
I
N
N
D
TNA
E
I
IKT
MS
R
CL
S
E
FG
I
Y
F
Q
D
N
KF
DAVM
I
LGDRYEI
M
SVA
L
AA
A
MHN
L
P
I
IH
F
HGGEKTL
G
NYDEFIRHSITKMS
S
LHL
A
ST
H
EY
R
KR
I
IQ
M
GE
H
P
S
N
V
YD
IG
A
LGAEN
S
L
L
L
T
LP
P
K
D
V
LE
Q
K
F
G
G
L
S
K
P
YFVVVFHPETLS
-
G
V
S
P
E
I
Q
V
Q
S
LL
KSL
H
S
F
IK
KY
--
N
F
V
FIGSN
S
DTGSD
K
I
T
Q
K
I
K
N
FCK
E
NNTK
Y
FV
SI
LP
E
E
YLA
LC
KYS
Q
GLIGNSSSGLIEVPSL
G
V
P
T
V
NIGDRQ
K
GRV
H
G
T
T
VI
NCEC
S
TE
G
I
S
EA
I
KK
CL
DE
H
Y
I
N
G
I
-
KNA
V
NPY
Y
K
H
N
----
VMN
NA
YKH
IK
E
F
L
LS
N
HEQ
YKDFYD
V
SFEL
fig|585055.6.peg.2327
Escherichia coli 55989
MKKILYVTGSRAEYGI
MK
RLL
QQ
L
K
E
DD
S
I
D
L
SI
V
A
TGMHCD
K
K
YG
M
T
YK
V
IE
N
D
G
F
R
V
D
K
I
I
DI
E
I
N
N
D
TNA
E
I
IKT
MS
R
CL
S
E
FG
I
Y
F
Q
D
N
KF
DAVM
I
LGDRYEI
M
SVA
L
AA
A
MHN
L
P
I
IH
F
HGGEKTL
G
NYDEFIRHSITKMS
S
LHL
A
ST
H
EY
R
KR
I
IQ
M
GE
H
P
S
N
V
YD
IG
A
LGAEN
S
L
L
L
T
LP
P
K
D
V
LE
Q
K
F
G
G
L
S
K
P
YFVVVFHPETLS
-
G
V
S
P
E
I
Q
V
Q
S
LL
KSL
H
S
F
IK
KY
--
N
F
V
FIGSN
S
DTGSD
K
I
T
Q
K
I
K
N
FCK
E
NNTK
Y
FV
SI
LP
E
E
YLA
LC
KYS
Q
GLIGNSSSGLIEVPSL
G
V
P
T
V
NIGDRQ
K
GRV
H
G
T
T
VI
NCEC
S
TE
G
I
S
EA
I
KK
CL
DE
H
Y
I
N
G
I
-
KNA
V
NPY
Y
K
H
N
----
VMN
NA
YKH
IK
E
F
L
LS
N
HEQ
YKDFYD
V
SFEL
fig|585055.8.peg.2335
Escherichia coli 55989
MKKILYVTGSRAEYGI
MK
RLL
QQ
L
K
E
DD
S
I
D
L
SI
V
A
TGMHCD
K
K
YG
M
T
YK
V
IE
N
D
G
F
R
V
D
K
I
I
DI
E
I
N
N
D
TNA
E
I
IKT
MS
R
CL
S
E
FG
I
Y
F
Q
D
N
KF
DAVM
I
LGDRYEI
M
SVA
L
AA
A
MHN
L
P
I
IH
F
HGGEKTL
G
NYDEFIRHSITKMS
S
LHL
A
ST
H
EY
R
KR
I
IQ
M
GE
H
P
S
N
V
YD
IG
A
LGAEN
S
L
L
L
T
LP
P
K
D
V
LE
Q
K
F
G
G
L
S
K
P
YFVVVFHPETLS
-
G
V
S
P
E
I
Q
V
Q
S
LL
KSL
H
S
F
IK
KY
--
N
F
V
FIGSN
S
DTGSD
K
I
T
Q
K
I
K
N
FCK
E
NNTK
Y
FV
SI
LP
E
E
YLA
LC
KYS
Q
GLIGNSSSGLIEVPSL
G
V
P
T
V
NIGDRQ
K
GRV
H
G
T
T
VI
NCEC
S
TE
G
I
S
EA
I
KK
CL
DE
H
Y
I
N
G
I
-
KNA
V
NPY
Y
K
H
N
----
VMN
NA
YKH
IK
E
F
L
LS
N
HEQ
YKDFYD
V
SFEL
fig|562.376.peg.1078
Escherichia coli WV_060327 (3-387/392)
R
K
L
LYVTGSRAEYGI
MK
RLL
KS
L
KDD
P
D
I
D
L
SI
I
A
TGMHCD
S
E
YG
Y
T
YK
T
IE
N
D
G
F
L
I
E
K
L
I
D
L
Q
L
K
N
K
TNA
D
V
L
KT
MS
I
C
Q
Q
A
FG
E
H
F
Q
E
K
K
YDAV
II
LGDRYEIFSVA
V
AASMHN
L
P
I
IH
L
HGGEKTL
G
NYDEFIRHSITKMS
R
LHL
V
ST
D
EY
R
KRVIQLGE
D
P
N
C
VFN
V
G
A
LGAEN
S
L
Q
L
E
LP
S
K
K
ELE
N
KYG
G
L
N
R
K
YFVVVFHPETLS
-
T
L
P
V
R
E
Q
Y
L
ELL
E
A
L
A
S
F
SE
E
Y
--
D
Y
IFIGSNADTGS
E
Q
I
R
EMT
L
D
FC
R
V
Y
GC
RY
M
IS
V
R
P
E
E
YLA
L
IKYS
Y
GLIGNSSSGLIEVPSLKV
P
TINIGDRQ
T
GRVRG
D
SVID
TI
C
K
K
E
S
I
E
C
A
I
AY
SQ
Q
K
S
FI
E
R
V
-
KNA
H
NPY
Y
NN
D
----
VMNSI
V
K
IIKDF
L
TY
E
KLG
YKDFYD
V
AYD
fig|405955.13.peg.3364
Escherichia coli APEC O1 (1-383/391)
MKKILYVTGSRAEYGIVRRLL
TM
LRETP
E
IQLDL
A
VTGMHCD
N
AYG
N
TIH
I
IEQDNF
N
I
I
KVVDINI
N
T
T
SHT
H
ILHSMSVCLN
S
FG
D
FFSN
N
TYDAVMVLGDRYEIFSVAIAASMHNIPLIH
I
HGGEKTLANYDEFIRHSITKMS
K
LHL
T
STEEYKKRVIQLGE
K
PG
S
VFNIGSLGAENALSL
H
LP
N
K
Q
ELE
L
KYGSLLK
R
YFVVVFHPETLS
-
T
Q
SV
N
DQI
D
ELLSAI
S
FF
KN
TH
--
DFIFIGSNADTGSDIIQRKVK
Y
FCK
E
YKFRYLISIRSEDYLAMIKYS
C
GLIGNSSSGLIEVPSLKVATINIGDRQ
K
GRVRG
A
SVIDVPV
E
KN
A
I
V
RGI
NI
SQDE
K
FIS
V
V
-
QSS
S
NPYFKEN
----
ALINAVRIIKDFI
KS
K
NKD
YKDFYDI
fig|405955.9.peg.2783
Escherichia coli APEC O1 (1-383/391)
MKKILYVTGSRAEYGIVRRLL
TM
LRETP
E
IQLDL
A
VTGMHCD
N
AYG
N
TIH
I
IEQDNF
N
I
I
KVVDINI
N
T
T
SHT
H
ILHSMSVCLN
S
FG
D
FFSN
N
TYDAVMVLGDRYEIFSVAIAASMHNIPLIH
I
HGGEKTLANYDEFIRHSITKMS
K
LHL
T
STEEYKKRVIQLGE
K
PG
S
VFNIGSLGAENALSL
H
LP
N
K
Q
ELE
L
KYGSLLK
R
YFVVVFHPETLS
-
T
Q
SV
N
DQI
D
ELLSAI
S
FF
KN
TH
--
DFIFIGSNADTGSDIIQRKVK
Y
FCK
E
YKFRYLISIRSEDYLAMIKYS
C
GLIGNSSSGLIEVPSLKVATINIGDRQ
K
GRVRG
A
SVIDVPV
E
KN
A
I
V
RGI
NI
SQDE
K
FIS
V
V
-
QSS
S
NPYFKEN
----
ALINAVRIIKDFI
KS
K
NKD
YKDFYDI
fig|585057.4.peg.3563
Escherichia coli IAI39 (1-383/391)
MKKILYVTGSRAEYGIVRRLL
TM
LRETP
E
IQLDL
A
VTGMHCD
N
AYG
N
TIH
I
IEQDNF
N
I
I
KVVDINI
N
T
T
SHT
H
ILHSMSVCLN
S
FG
D
FFSN
N
TYDAVMVLGDRYEIFSVAIAASMHNIPLIH
I
HGGEKTLANYDEFIRHSITKMS
K
LHL
T
STEEYKKRVIQLGE
K
PG
S
VFNIGSLGAENALSL
H
LP
N
K
Q
ELE
L
KYGSLLK
R
YFVVVFHPETLS
-
T
Q
SV
N
DQI
D
ELLSAI
S
FF
KN
TH
--
DFIFIGSNADTGSDIIQRKVK
Y
FCK
E
YKFRYLISIRSEDYLAMIKYS
C
GLIGNSSSGLIEVPSLKVATINIGDRQ
K
GRVRG
A
SVIDVPV
E
KN
A
I
V
RGI
NI
SQDE
K
FIS
V
V
-
QSS
S
NPYFKEN
----
ALINAVRIIKDFI
KS
K
NKD
YKDFYDI
fig|585057.6.peg.3572
Escherichia coli IAI39 (1-383/391)
MKKILYVTGSRAEYGIVRRLL
TM
LRETP
E
IQLDL
A
VTGMHCD
N
AYG
N
TIH
I
IEQDNF
N
I
I
KVVDINI
N
T
T
SHT
H
ILHSMSVCLN
S
FG
D
FFSN
N
TYDAVMVLGDRYEIFSVAIAASMHNIPLIH
I
HGGEKTLANYDEFIRHSITKMS
K
LHL
T
STEEYKKRVIQLGE
K
PG
S
VFNIGSLGAENALSL
H
LP
N
K
Q
ELE
L
KYGSLLK
R
YFVVVFHPETLS
-
T
Q
SV
N
DQI
D
ELLSAI
S
FF
KN
TH
--
DFIFIGSNADTGSDIIQRKVK
Y
FCK
E
YKFRYLISIRSEDYLAMIKYS
C
GLIGNSSSGLIEVPSLKVATINIGDRQ
K
GRVRG
A
SVIDVPV
E
KN
A
I
V
RGI
NI
SQDE
K
FIS
V
V
-
QSS
S
NPYFKEN
----
ALINAVRIIKDFI
KS
K
NKD
YKDFYDI
fig|714962.3.peg.3403
Escherichia coli IHE3034 (1-383/391)
MKKILYVTGSRAEYGIVRRLL
TM
LRETP
E
IQLDL
A
VTGMHCD
N
AYG
N
TIH
I
IEQDNF
N
I
I
KVVDINI
N
T
T
SHT
H
ILHSMSVCLN
S
FG
D
FFSN
N
TYDAVMVLGDRYEIFSVAIAASMHNIPLIH
I
HGGEKTLANYDEFIRHSITKMS
K
LHL
T
STEEYKKRVIQLGE
K
PG
S
VFNIGSLGAENALSL
H
LP
N
K
Q
ELE
L
KYGSLLK
R
YFVVVFHPETLS
-
T
Q
SV
N
DQI
D
ELLSAI
S
FF
KN
TH
--
DFIFIGSNADTGSDIIQRKVK
Y
FCK
E
YKFRYLISIRSEDYLAMIKYS
C
GLIGNSSSGLIEVPSLKVATINIGDRQ
K
GRVRG
A
SVIDVPV
E
KN
A
I
V
RGI
NI
SQDE
K
FIS
V
V
-
QSS
S
NPYFKEN
----
ALINAVRIIKDFI
KS
K
NKD
YKDFYDI
fig|749548.3.peg.465
Escherichia coli MS 196-1 (1-383/391)
MKKILYVTGSRAEYGIVRRLL
TM
LRETP
E
IQLDL
A
VTGMHCD
N
AYG
N
TIH
I
IEQDNF
N
I
I
KVVDINI
N
T
T
SHT
H
ILHSMSVCLN
S
FG
D
FFSN
N
TYDAVMVLGDRYEIFSVAIAASMHNIPLIH
I
HGGEKTLANYDEFIRHSITKMS
K
LHL
T
STEEYKKRVIQLGE
K
PG
S
VFNIGSLGAENALSL
H
LP
N
K
Q
ELE
L
KYGSLLK
R
YFVVVFHPETLS
-
T
Q
SV
N
DQI
D
ELLSAI
S
FF
KN
TH
--
DFIFIGSNADTGSDIIQRKVK
Y
FCK
E
YKFRYLISIRSEDYLAMIKYS
C
GLIGNSSSGLIEVPSLKVATINIGDRQ
K
GRVRG
A
SVIDVPV
E
KN
A
I
V
RGI
NI
SQDE
K
FIS
V
V
-
QSS
S
NPYFKEN
----
ALINAVRIIKDFI
KS
K
NKD
YKDFYDI
fig|753642.3.peg.5036
Escherichia coli NC101 (1-383/391)
MKKILYVTGSRAEYGIVRRLL
TM
LRETP
E
IQLDL
A
VTGMHCD
N
AYG
N
TIH
I
IEQDNF
N
I
I
KVVDINI
N
T
T
SHT
H
ILHSMSVCLN
S
FG
D
FFSN
N
TYDAVMVLGDRYEIFSVAIAASMHNIPLIH
I
HGGEKTLANYDEFIRHSITKMS
K
LHL
T
STEEYKKRVIQLGE
K
PG
S
VFNIGSLGAENALSL
H
LP
N
K
Q
ELE
L
KYGSLLK
R
YFVVVFHPETLS
-
T
Q
SV
N
DQI
D
ELLSAI
S
FF
KN
TH
--
DFIFIGSNADTGSDIIQRKVK
Y
FCK
E
YKFRYLISIRSEDYLAMIKYS
C
GLIGNSSSGLIEVPSLKVATINIGDRQ
K
GRVRG
A
SVIDVPV
E
KN
A
I
V
RGI
NI
SQDE
K
FIS
V
V
-
QSS
S
NPYFKEN
----
ALINAVRIIKDFI
KS
K
NKD
YKDFYDI
fig|585035.6.peg.3263
Escherichia coli S88 (1-383/391)
MKKILYVTGSRAEYGIVRRLL
TM
LRETP
E
IQLDL
A
VTGMHCD
N
AYG
N
TIH
I
IEQDNF
N
I
I
KVVDINI
N
T
T
SHT
H
ILHSMSVCLN
S
FG
D
FFSN
N
TYDAVMVLGDRYEIFSVAIAASMHNIPLIH
I
HGGEKTLANYDEFIRHSITKMS
K
LHL
T
STEEYKKRVIQLGE
K
PG
S
VFNIGSLGAENALSL
H
LP
N
K
Q
ELE
L
KYGSLLK
R
YFVVVFHPETLS
-
T
Q
SV
N
DQI
D
ELLSAI
S
FF
KN
TH
--
DFIFIGSNADTGSDIIQRKVK
Y
FCK
E
YKFRYLISIRSEDYLAMIKYS
C
GLIGNSSSGLIEVPSLKVATINIGDRQ
K
GRVRG
A
SVIDVPV
E
KN
A
I
V
RGI
NI
SQDE
K
FIS
V
V
-
QSS
S
NPYFKEN
----
ALINAVRIIKDFI
KS
K
NKD
YKDFYDI
fig|869729.3.peg.346
Escherichia coli UM146 (1-383/391)
MKKILYVTGSRAEYGIVRRLL
TM
LRETP
E
IQLDL
A
VTGMHCD
N
AYG
N
TIH
I
IEQDNF
N
I
I
KVVDINI
N
T
T
SHT
H
ILHSMSVCLN
S
FG
D
FFSN
N
TYDAVMVLGDRYEIFSVAIAASMHNIPLIH
I
HGGEKTLANYDEFIRHSITKMS
K
LHL
T
STEEYKKRVIQLGE
K
PG
S
VFNIGSLGAENALSL
H
LP
N
K
Q
ELE
L
KYGSLLK
R
YFVVVFHPETLS
-
T
Q
SV
N
DQI
D
ELLSAI
S
FF
KN
TH
--
DFIFIGSNADTGSDIIQRKVK
Y
FCK
E
YKFRYLISIRSEDYLAMIKYS
C
GLIGNSSSGLIEVPSLKVATINIGDRQ
K
GRVRG
A
SVIDVPV
E
KN
A
I
V
RGI
NI
SQDE
K
FIS
V
V
-
QSS
S
NPYFKEN
----
ALINAVRIIKDFI
KS
K
NKD
YKDFYDI
fig|364106.7.peg.3339
Escherichia coli UTI89 (1-383/391)
MKKILYVTGSRAEYGIVRRLL
TM
LRETP
E
IQLDL
A
VTGMHCD
N
AYG
N
TIH
I
IEQDNF
N
I
I
KVVDINI
N
T
T
SHT
H
ILHSMSVCLN
S
FG
D
FFSN
N
TYDAVMVLGDRYEIFSVAIAASMHNIPLIH
I
HGGEKTLANYDEFIRHSITKMS
K
LHL
T
STEEYKKRVIQLGE
K
PG
S
VFNIGSLGAENALSL
H
LP
N
K
Q
ELE
L
KYGSLLK
R
YFVVVFHPETLS
-
T
Q
SV
N
DQI
D
ELLSAI
S
FF
KN
TH
--
DFIFIGSNADTGSDIIQRKVK
Y
FCK
E
YKFRYLISIRSEDYLAMIKYS
C
GLIGNSSSGLIEVPSLKVATINIGDRQ
K
GRVRG
A
SVIDVPV
E
KN
A
I
V
RGI
NI
SQDE
K
FIS
V
V
-
QSS
S
NPYFKEN
----
ALINAVRIIKDFI
KS
K
NKD
YKDFYDI
fig|364106.8.peg.3340
Escherichia coli UTI89 (1-383/391)
MKKILYVTGSRAEYGIVRRLL
TM
LRETP
E
IQLDL
A
VTGMHCD
N
AYG
N
TIH
I
IEQDNF
N
I
I
KVVDINI
N
T
T
SHT
H
ILHSMSVCLN
S
FG
D
FFSN
N
TYDAVMVLGDRYEIFSVAIAASMHNIPLIH
I
HGGEKTLANYDEFIRHSITKMS
K
LHL
T
STEEYKKRVIQLGE
K
PG
S
VFNIGSLGAENALSL
H
LP
N
K
Q
ELE
L
KYGSLLK
R
YFVVVFHPETLS
-
T
Q
SV
N
DQI
D
ELLSAI
S
FF
KN
TH
--
DFIFIGSNADTGSDIIQRKVK
Y
FCK
E
YKFRYLISIRSEDYLAMIKYS
C
GLIGNSSSGLIEVPSLKVATINIGDRQ
K
GRVRG
A
SVIDVPV
E
KN
A
I
V
RGI
NI
SQDE
K
FIS
V
V
-
QSS
S
NPYFKEN
----
ALINAVRIIKDFI
KS
K
NKD
YKDFYDI
fig|439855.10.peg.3391
Escherichia coli SMS-3-5 (1-383/391)
MKKILYVTGSRAEYGIVRRLL
TM
LRETP
E
IQLDL
A
VTGMHCD
N
AYG
N
TIH
I
IEQDNF
N
I
I
KVVDINI
N
T
T
SHT
H
ILHSMSVCLN
S
FG
D
FFSN
N
TYDAVMVLGDRYEIFSVAIAASMHNIPLIH
I
HGGEKTLANYDEFIRHSITKMS
K
LHL
T
STEEYKKRVIQLGE
K
PG
S
VFNIGSLGAENALSL
H
LP
N
K
Q
ELE
L
KYGSLLK
R
YFVVVFHPETLS
-
T
Q
SV
N
DQI
D
ELLSAI
S
FF
KN
TH
--
DFIFIGSNADTGSDIIQRKVK
Y
FCK
E
YKFRYLISIRSEDYLAMIK
C
S
C
GLIGNSSSGLIEVPSLKVATINIGDRQ
K
GRVRG
A
SVIDVPV
E
KN
A
I
V
RGI
NI
SQDE
K
FIS
V
V
-
QSS
S
NPYFKEN
----
ALINAVRIIKDFI
KS
K
NKD
YKDFYDI
fig|656393.3.peg.3056
Escherichia coli H299 (1-386/395)
MKKILY
I
TGSRAEYGI
MK
RLL
RK
L
KD
NE
H
I
E
L
SI
I
A
TGMHCD
A
K
YG
Y
T
Y
Q
N
I
ID
D
G
F
E
V
K
EL
F
DINI
E
S
S
TN
S
G
I
I
S
T
MS
R
A
Q
N
L
FG
A
Y
F
EE
Y
K
YDA
I
II
LGDRYE
M
L
SVAIAAS
I
H
G
IP
I
IH
L
HGGE
Q
TL
G
NYDEFIRH
C
ITKMS
H
LHL
V
A
TE
K
Y
R
E
RVIQLGE
L
P
S
W
V
I
NIG
A
M
GAEN
T
V
SL
S
I
P
E
H
K
EL
Q
S
KY
E
N
S
L
S
N
YF
MIL
FHPETL
T
KN
K
SV
H
DQI
K
EL
I
K
A
L
D
IA
HQ
KY
HC
N
FIFIG
T
NADT
N
SDII
T
KE
IL
T
FC
E
S
Y
N
F
P
YL
L
S
L
P
TQ
DYL
G
LC
KYS
L
GLIGNSSSGLIE
I
PSL
G
V
P
TINIG
S
RQ
A
GR
E
RG
K
SVIDV
EC
C
YT
D
I
L
E
K
I
--
--
D
D
V
IS
N
R
I
D
RT
Y
Y
NPY
Y
KEN
SAEI
A
M
S
SI
I
SF
L
-
D
W
I
SD
N
KNR
I
K
K
FYDI
Consen1
Primary consensus
MKKILYVTGSRAEYGIvrRLL
Lretp
IqLdl
vTGMHCD
aYG
Tih
IEqDnF
i
KvvDInI
t
sht
IlhsMSvCln
FG
fFsn
tyDAVmvLGDRYEIfSVAiAAsMHNiPlIH
HGGEKTLaNYDEFIRHSITKMS
LHL
STeEYkKRvIQlGE
Pg
VfnIGsLGAENaLsL
LP
K
eLE
KyGsLlk
YFVVVFHPETLS
-
t
Sv
dQi
eLLsai
fF
th
--
dFiFIGSNaDTGSDiIqrkvk
FCk
ykfrYliSirsEdYLAmiKYS
GLIGNSSSGLIEVPSLkVaTiNIGDRQ
GRVrG
sVIdvpv
kn
I
rgI
sqDe
fIs
v
-
qss
NPYfKeN
----
alinavriIKdFi
k
YKDFYDiSFEL
Consen2
Secondary consensus
mk
kddd
d
si
a
k
yk
n
g
v
i
e
n
tna
ikt
r
qs
y
q
kf
ii
m
l
a
l
i
g
h
r
i
m
s
yd
a
s
l
v
f
g
s
g
p
i
v
s
ksl
s
ky
n
v
s
k
t
il
nntk
fv
lp
e
lc
g
p
v
h
t
ncec
te
ea
cl
y
n
i
kna
y
h
vmnsiykh
e
l
n
v
Consensus 1
(when a gap)
Conservative difference
Consensus 2
(when a gap)
Nonconservative diff.
Other character