fig|595495.4.peg.4705   Escherichia coli KO11     M-----SYLIDLIENKSYRHVKIHNVQKTSRYGIFYLQKLTK
fig|566546.3.peg.4285   Escherichia coli W     M-----SYLIDLIENKSYRHVKIHNVQKTSRYGIFYLQKLTK
fig|566546.4.peg.2832   Escherichia coli W     M-----SYLIDLIENKSYRHVKIHNVQKTSRYGIFYLQKLTK
fig|1040638.4.peg.3078   Escherichia coli O104:H4 str. LB226692     M-----SYLIDLIENKSYRHVKIHNVQKTSRYGIFYLQKLTK
fig|562.374.peg.4030   Escherichia coli 536A     MKLKERSYPIDLIENKSYQHVKIHNAQKTSRYGIFYLQKLTK
fig|562.372.peg.2092   Escherichia coli 1212A     MKLKERSYPIDLIENKSYQHVKIHNAQKTSRYGIFYLQKLTK
fig|656417.3.peg.3412   Escherichia coli M605     MKIKASTYPIDLIKNKSYRHVKIHNVQKTRRYGIFYLQKQIK
fig|670897.3.peg.1284   Escherichia coli 2362-75     MKIKVNTYPIDLIKNKSYRHVKIHNVQKTRRYGIFYLQKQIK
fig|562.376.peg.3477   Escherichia coli WV_060327     MKIKVNTYPIDLIKNKSYRHVKIHNVQKTRRYGIFYLQKQIK
fig|753642.3.peg.491   Escherichia coli NC101     MKIKVNTYPIDLIKNKSYRHVKIHNVQKTRRYGIFYLQKQIK
fig|869729.3.peg.702   Escherichia coli UM146     MKIKVNTYPIDLIKNKSYRHVKIHNVQKTRRYGIFYLQKQIK
fig|749528.3.peg.3322   Escherichia coli MS 45-1     MKIKVNTYPIDLIKNKSYRHVKIHNVQKTRRYGIFYLQKQIK
fig|749527.3.peg.5464   Escherichia coli MS 21-1     MKIKVNTYPIDLIKNKSYRHVKIHNVQKTRRYGIFYLQKQIK
fig|656444.3.peg.3778   Escherichia coli TA280     MKIKVNTYPIDLIKNKPYRHVKIHNVQKTRRYGIFYLQKQFK
fig|656440.3.peg.2684   Escherichia coli TA206     MKTKVNTYPIDLIKNKSYRHVKIHNVQKTRRYGIFYLQKQIK
fig|656393.3.peg.3652   Escherichia coli H299     MKIKVNTYPIDLIKNKSYRHVKIHNVQKTRRYGIFYLQKQIK
fig|199310.1.peg.3145   Escherichia coli CFT073     MKIKVNTYPIDLIKNKSYRHVKIHNVQKTRRYGIFYLQKQIK
fig|655817.3.peg.3053   Escherichia coli ABU 83972     MKIKVNTYPIDLIKNKSYRHVKIHNVQKTRRYGIFYLQKQIK
fig|749550.3.peg.3523   Escherichia coli MS 200-1     MKIKVNTYPIDLIKNKSYRHVKIHNVQKTRRYGIFYLQKQIK
fig|216593.1.peg.1001   Escherichia coli E2348/69     MKIKVNTYPIDLIKNKSYQHVKIHNVQKTRRYGIFYLQKQIK
Consen1   Primary consensus     Mk k  tYpIDLIkNKSYrHVKIHNVQKTrRYGIFYLQKqiK
Consen2   Secondary consensus           s l    e    q          s         lt 

Consensus 1 (when a gap)
Conservative difference
Consensus 2 (when a gap)
Nonconservative diff.
Other character