fig|1040638.4.peg.283   Escherichia coli O104:H4 str. LB226692     MQHQHGGEPPGVVLSFVLWIVFCIRRRSVLGIGVMIGIAQSGW
fig|216592.1.peg.5202   Escherichia coli 042     MAVNRR----AWFLSFVLWIVFCIRRRSVLGIGAMIGIAQSGW
fig|216592.3.peg.4739   Escherichia coli 042     MAVSRR----AWFLSFVLWIVFCIRRRSVLGIGVMIGIAQSGW
fig|585055.8.peg.3339   Escherichia coli 55989     MAVSRR----AWFLSFVLWIVFCIRRRSVLGIGVMIGIAQSGW
fig|585055.6.peg.3335   Escherichia coli 55989     MAVSRR----AWFLSFVLWIVFCIRRRSVLGIGVMIGIAQSGW
Consen1   Primary consensus     MAVsRR----AWFLSFVLWIVFCIRRRSVLGIGVMIGIAQSGW
Consen2   Secondary consensus                                                

Consensus 1 (when a gap)
Conservative difference
Consensus 2 (when a gap)
Nonconservative diff.
Other character