fig|1040638.4.peg.218   Escherichia coli O104:H4 str. LB226692     M-------------------------VFSKFKKKTRRVATEIKKFEKRDLAQAVIGVGVMVDFISRIMSVLADSWGCWCGLPIDEKTSYYLACYL
fig|6666666.5357.peg.2019   Escherichia coli TY-2482     M-------------------------VFSKFKKKTRRVATEIKKFEKRDLAQAVIGVGVMVDFISRIMSVLADSWGCWCGLPIDEKTSYYLACYL
fig|749538.3.peg.335   Escherichia coli MS 116-1     MVWLTFSVGRSFPLDSSSPKETSRYLVFSKFKKKTRRVATEIKKFEKRDLAQAVIGVGVMVDFISRIMSVLADSWGCWCGLPIDEKTSNYLAYYL
fig|749550.3.peg.2848   Escherichia coli MS 200-1     M-------------------------VFSKFKKKTRRVATEIKKFEKRDLAQAVIGVGVMVDFISRIMSVLADSWGCWCGLPIDEKTSNYLAYYL
Consen1   Primary consensus     M-------------------------VFSKFKKKTRRVATEIKKFEKRDLAQAVIGVGVMVDFISRIMSVLADSWGCWCGLPIDEKTSnYLAcYL
Consen2   Secondary consensus                                                                                             y   y  

Consensus 1 (when a gap)
Conservative difference
Consensus 2 (when a gap)
Nonconservative diff.
Other character