fig|1040638.4.peg.201   Escherichia coli O104:H4 str. LB226692     MYLSVLLIFAVNCYYAHPLLMEWLRRVKTEXTYVYLNGTRLLVELPYQTVREIISEAEKARQVNGDKPYIEIICIDSEAEIQKAD
fig|656393.3.peg.2725   Escherichia coli H299     MYLSVLLIFAVNCYYAHQPLTELFHPKKNAATYVYLNGTRLTVELPYQTVREIISEAEKARQVNGDEPYIEIICMDSEAEIQKAD
Consen1   Primary consensus     MYLSVLLIFAVNCYYAH  L E     K   TYVYLNGTRL VELPYQTVREIISEAEKARQVNGD PYIEIIC DSEAEIQKAD
Consen2   Secondary consensus                                                                                          

Consensus 1 (when a gap)
Conservative difference
Consensus 2 (when a gap)
Nonconservative diff.
Other character