┌─ Escherichia coli (4-250/252) MS 124-1 (1)  
                                                   ┌┴─ Escherichia coli (4-250/252) 2362-75 (10)  
                                                  ┌┴─ Escherichia coli (4-250/252) K12 (85)  
                                                 ┌┴─ Escherichia coli (4-250/252) UM146 (2)  
                                                ┌┴┬─ Escherichia coli (4-250/252) WV_060327   
                                               ┌┤ └─ fig|1040638.4.peg.4684 O104:H4 (4-250/252) str. LB226692 (23)  
                               ┌───────────────┤└─ Escherichia coli (4-250/252) FVEC1302 (4)  
                               │               └─ Escherichia coli (4-250/252) SMS-3-5   
  ┌────────────────────────────┤                             ┌─ Escherichia coli (4-238/260) MS 200-1   
  │                            └────────────────────────────┬┴─ fig|1040638.4.peg.675 O104:H4 (4-238/260) str. LB226692 (7)  
  │                                                         └┬─ Escherichia coli (4-238/260) 536 (11)  
┌─┤                                                          └┬─ Escherichia coli (4-238/260) MS 107-1   
│ │                                                           └─ Escherichia coli (4-238/260) ED1a (7)  
│ └──────────────────────────────────┬─ Escherichia coli (4-244/260) K12 (20)  
│                                    └─ Escherichia coli (4-244/260) MS 145-7 (1)  
│                                                       ┌─ Escherichia coli (19-264/269) K12 (68)  
│                                                      ┌┴─ Escherichia coli (11-256/261) E24377A (1)  
│                                                     ┌┴─ Escherichia coli (2-240/245) 53638 (13)  
│                                                    ┌┴─ Escherichia coli (19-262/269) O157:H7 EDL933 (1)  
│                                                  ┌─┴┬─ Escherichia coli (2-240/245) SE15   
│                                             ┌────┤  └─ Escherichia coli (11-256/261) M605   
│                              ┌──────────────┤    └── Escherichia coli (11-254/266) O157:H7 str. EC4024   
│                              │              └────┬─ Escherichia coli (11-254/262) O83:H1 str. NRG 857C   
│                              │                   └┬─ Escherichia coli (11-254/262) EC4100B   
│                              │                    └┬─ fig|1040638.4.peg.1285 O104:H4 (11-254/262) str. LB226692 (24)  
│               ┌──────────────┤                     └┬─ Escherichia coli (11-254/262) 536 (4)  
│               │              │                      └─ Escherichia coli (11-254/262) 2362-75 (10)  
│               │              │           ┌─── Escherichia coli O157:H7 str. EC4024   
│               │              └───────────┤┌─ Escherichia coli 2362-75 (27)  
│               │                          └┤┌─ Escherichia coli 1044A (25)  
│               │                           └┤┌─ Escherichia coli B185   
│               │                            └┤ ┌─ Escherichia coli K12 (62)  
┤               │                             └┬┴─ Escherichia coli MS 78-1   
│     ┌─────────┤                              └┬─ Escherichia coli DH1   
│     │         │                               └┬─ Escherichia coli 1827-70 (7)  
│     │         │                                └┬─ Escherichia coli B str. REL606   
│     │         │                                 └─ Escherichia coli 101-1 (3)  
│     │         │                                     ┌─ Escherichia coli (1-238/240) B088   
│     │         │                                    ┌┴─ Escherichia coli (1-250/252) E24377A (1)  
│     │         │                                   ┌┴─ Escherichia coli (1-250/252) K12 (16)  
│     │         │                                  ┌┴─ Escherichia coli (1-238/240) str. K-12 substr. DH10B   
│     │         └──────────────────────────────────┤┌─ Escherichia coli (1-238/240) O127:H6 str. E2348/69 (1)  
│     │                                            ││ ┌─ Escherichia coli (1-250/252) TA206   
│     │                                            └┤┌┴─ Escherichia coli (1-250/252) O157:H7 str. EC508   
│     │                                             ││ ┌─ Escherichia coli (1-250/252) M605   
│     │                                             └┤┌┴─ Escherichia coli (1-238/240) SMS-3-5   
│     │                                              ││  ┌─ fig|1040638.4.peg.3838 O104:H4 (1-250/252) str. LB226692 (76)  
│     │                                              └┤ ┌┴─ Escherichia coli (1-250/252) 1827-70 (2)  
│     │                                               │┌┴─ Escherichia coli (1-250/252) 042 (1)  
│     │                                               └┤ ┌─ Escherichia coli (1-250/252) M718   
│     │                                                └┬┴─ Escherichia coli (1-250/252) E110019 (1)  
│     │                                                 └┬─ Escherichia coli (1-250/252) SE15   
│     │                                                  └─ Escherichia coli (1-250/252) MS 187-1   
└─────┤                                   ┌─ Escherichia coli (1-249/257) 1044A (23)  
      │                                  ┌┴─ Escherichia coli (1-249/257) M718   
      │                                 ┌┴─ Escherichia coli (1-249/257) 536 (26)  
      │                                ┌┴─ Escherichia coli (1-249/257) ETEC H10407   
      │                               ┌┴─ Escherichia coli (1-249/257) K12 (41)  
      │                              ┌┴─ Escherichia coli (1-232/257) 042 (11)  
      │         ┌────────────────────┴┬─ Escherichia coli (1-249/257) MS 182-1   
      │         │                     └─ fig|1040638.4.peg.2569 O104:H4 (1-249/257) str. LB226692 (17)  
      │ ┌───────┤                    ┌─ Escherichia coli (16-266/269) MS 182-1 (1)  
      │ │       │                   ┌┴─ Escherichia coli (16-266/269) E24377A (1)  
      │ │       └───────────────────┤ ┌─ Escherichia coli (16-266/274) APEC O1 (6)  
      │ │                           │┌┴─ Escherichia coli (16-266/269) O111:H- str. 11128 (1)  
      │ │                           └┤ ┌─ Escherichia coli (16-266/269) K12 (110)  
      │ │                            └┬┴─ Escherichia coli (16-266/274) 2362-75 (1)  
      │ │                             └┬─ Escherichia coli (16-266/269) MS 21-1   
      │ │                              └─ Escherichia coli (1-235/238) B088 (2)  
      │ │                                            ┌─ Escherichia coli (15-259/265) APEC O1 (2)  
      │ │                                           ┌┴─ Escherichia coli (1-249/255) H299   
      │ │                                          ┌┴┬─ Escherichia coli (1-249/255) IHE3034   
      │ │                                          │ └─ Escherichia coli (1-249/255) 2362-75 (10)  
      └─┤                                         ┌┤ ┌─ Escherichia coli (1-249/255) NC101   
        │                                         │└┬┴─ Escherichia coli (15-259/265) CFT073 (1)  
        │                                        ┌┤ └┬─ Escherichia coli (1-249/255) 536   
        │                                        ││  └─ Escherichia coli (1-249/255) ABU 83972 (7)  
        │                                        │└┬─ Escherichia coli (1-249/255) 101-1 (10)  
        │             ┌──────────────────────────┤ └┬─ Escherichia coli (15-259/265) ATCC 8739 (1)  
        │             │                          │  └┬─ Escherichia coli (15-259/265) K12 (3)  
        │             │                          │   └─ Escherichia coli (1-249/255) 53638 (12)  
        │   ┌─────────┤                          └┬─ fig|1040638.4.peg.2605 O104:H4 (1-249/255) str. LB226692 (26)  
        │   │         │                           └┬─ Escherichia coli (1-249/255) MS 84-1   
        │   │         │                            └─ Escherichia coli (15-259/265) B088 (5)  
        │   │         └─────────────────────┬─ Escherichia coli (1-222/243) 2362-75 (19)  
        │   │                               └─ Escherichia coli (1-232/253) APEC O1 (4)  
        └───┤                                                         ┌─ Escherichia coli (2-225/235) 83972 (11)  
            │                                                        ┌┴─ Escherichia coli (1-241/251) 1827-70   
            │                                                       ┌┴─ Escherichia coli (1-241/251) K12 (115)  
            │                                                      ┌┴┬─ Escherichia coli (1-241/251) IAI39 (1)  
            │         ┌────────────────────────────────────────────┤ └─ Escherichia coli (2-225/235) SMS-3-5   
            └─────────┤                                            └─ Escherichia coli (1-241/251) MS 107-1   
                      │                           ┌─ Escherichia coli (4-227/249) UTI89 (1)  
                      └───────────────────────────┤┌─ Escherichia coli (4-227/249) K12 (100)  
                                                  └┤┌─ Escherichia coli (4-227/249) B354   
                                                   └┤┌─ fig|6666666.5357.peg.2961 TY-2482 (4-227/249) strain   
                                                    └┤ ┌─ Escherichia coli (4-227/249) IAI1 (1)  
                                                     │┌┴─ Escherichia coli (4-227/249) SE11   
                                                     └┤┌─ Escherichia coli (1-217/239) 2362-75 (11)  
                                                      └┤ ┌─ Escherichia coli (4-227/249) 83972 (5)  
                                                       └┬┴─ Escherichia coli (4-227/249) E24377A (1)  
                                                        └┬─ Escherichia coli (1-217/239) B088   
                                                         └─ Escherichia coli (4-227/249) MS 107-1   
  
Putative HTH-type transcriptional regulator YdjF (15)
DeoR-type transcriptional regulator YihW (11)
Glycerol-3-phosphate regulon repressor, DeoR family (10)
Transcriptional regulatory protein YciT (10)
Deoxyribose operon repressor, DeoR family (10)
Transcriptional repressor of aga operon (8)
Hypothetical transcriptional regulator ygbI (7)
Glucitol operon repressor (7)
Putative transcriptional regulator YgbI, DeoR family (6)
Ascorbate utilization transcriptional regulator UlaR, HTH-type (6)
Putative regulatory protein (2)
Glycerol-3-phosphate regulon repressor (2)
Putative deoxyribose operon repressor (1)
predicted DNA-binding transcriptional regulator (1)
Others (7)